• Cart
  • Checkout
  • Shopping Cart Shopping Cart
    0Shopping Cart
Botanically Inclined - Seed Adventures
  • BASE CAMP
  • BLOG
  • Hepatica
    • Notes on Hepatica acutiloba
    • Notes on Hepatica americana
    • Named forms and collection numbers
    • Hepatica: Intermediate forms and cf. designation
    • Hepatica: Pollination, seeds & germination
    • Transplanting and caring for Hepatica seedlings
  • SEEDS SHOP
  • The Seeds Library
    • Caryophyllaceae
    • Liliaceae
    • Gentianaceae
    • Ranunculaceae
    • Orobanchaceae
    • Iridaceae
    • Primulaceae
    • Papaveraceae
    • Violaceae
    • Berberidaceae
    • Boraginaceae
    • Compositae
    • Caprifoliaceae
    • Fabaceae
  • Click to open the search input field Click to open the search input field Search
  • Menu Menu

Reading seed coats

Propagation

Last week we had the simple answer to the ‘up’ and ‘down’ of a seed – sowing wise. Again, do not worry about the position of the seeds when sowing. Due to gravitropism, the radicles will always go ‘down’ and the cotyledon leaf(ves) ‘up’.

https://www.mobot.org/mobot/research/apweb/top/glossarya_h.html#A

For those willing to know more about this subject, theoretically we would be able to tell the up and down of a seed by ‘reading’ the few scars that remain on the seed coat during the seed formation (after fertilisation).

To explain more, a few botanical terms that may not be familiar to all will be used. For clarification I provide links to the excellent botany glossary developed on the Angiosperm Phylogeny Website from Missouri Botanical Garden.

I quote a paragraph from the introductory notes, because I think it should give us all a moment of meditation. Keep in mind that in nature nothing is ‘white & black’, there are endless variations to all situations.

Here we go.

On the seed coat we can identify 2 main scars: the micropyle and the hilum (in most species, but there are exceptions) that can be used to identify the ‘up’ and ‘down’ of a seed. In some cases we can also see a sort of ‘suture’ along the seed, called raphe, and various excrescences  like the caruncle, which is usually near the micropyle.

It is useful to know from what type of ovule the seed was formed.  For the vast majority of flowering plants the seeds are born from an anatropous ovule, so we will consider it as default. In this case, the micropyle is very close to the hilum.

Post-fertilization the micropyle remains as a small pore in the seed coat, which facilitates the entry of oxygen and water into the seed during germination. The radicle of the embryo will emerge through the micropyle.
So, by locating the micropyle on the seed surface, one would know which side is up and which one is down.
What’s simple in theory many times, it is not the same in practice. The micropyle doesn’t persist in all seeds, or it is impossible to see it with the naked eye. But the hilum is often a larger scar (at least on larger seeds), and we can search for it.

We can take Caulophyllum as an example, because for monitoring the embryo development I took many seeds images years ago.

*Also, keep in mind that for practical purposes sometimes we call various fruits ‘seeds’ (the achenes for examples). What we see in this case is the fruit surface not that of the seed coats.

In very rare cases the seeds are ‘born’ from an orthotropous (atropous) ovule. In this case the micropyle is on the same line, opposed to the hilum. A well-known species whose seeds are formed from such an ovule is Symplocarpus foetidus, the skunk cabbage. Same goes for Arisaema (and most of Araceae family).

The germination of skunk cabbage has intrigued me when I first observed it, because the radicle emerge almost at the same time or after with the shoots through the hilum. This has to do also with the fact that the seed embryo can have different sizes and positions in the seed: it can be straight, curved, convoluted and so on.

In the case of the skunk cabbage seeds, you would think there is no up and down at the beginning, but they figure it out soon after germination :-)

Without going into details, there are other sub-variants of the anatropous and orthotropus ovules; it is also worth noticing that in flowering plants most of the ovules are curved.

A simple example is the campylotropus ovule found in the legume family. In this case, the micropyle is almost touching the hilum (see Lespedeza germination).

 

So, in theory it looks good but imagine looking for the micropyle on a poppy seed :-) On the following plate, we can observe though that on the small seeds of Primula sieboldii, the micropyle/hilum area is visible.

A reminder about the SEEDs LIBRARY where those interested can try to locate, where possible, the micropyle/hilum area on various seeds.

1. Arisaema triphyllum (orthotropus ovule); From anatropus ovules 2. Amphicarpaea bracteata; 3. Disporum; 4. Streptopus  amplexifolius; 5. Chamaecytisus hirsutus (with caruncle); 6. Primula sieboldii.

We have a particular situation in the Liliaceae family where by looking at the seeds through a backlight, usually we can see the embryo; even more so after the seeds are imbibed with water. So, it is fairly easy to tell the ‘up’ and the ‘down’ (at pointed end).

Lilium embryo

Fritillaria pudica seeds (imbibed)

Based on other images I have in my ‘germination library’, it looks like most times the root will emerge from the ‘pointed’ side of the seeds; however, not all seeds have such a side.

Asarum canadense germinated seeds

Paeonia suffruticosa germinated seeds

Asclepias exaltata germinated seeds

Epimedium ‘Amber Queen’ OP germination (warm,cold)

Trillium grandiflorum germinating seeds Oct. 7, 2017

Paris quadrifolia germinated seeds

To conclude, sometimes we could tell the up and down of a seed by ‘reading’ the seed coat, especially for medium size and large seeds, but this is not always the case. From the point of view of sowing I don’t think it matters, even for larger seeds. In nature, no one arranges them when they fall on the ground.
A nice weekend to all. Enjoy the season of ten thousand flowers!

April 5, 2024
Share this entry
  • Share on Facebook
  • Share on WhatsApp
  • Share on Vk
https://i0.wp.com/botanicallyinclined.org/wp-content/uploads/2024/04/Seeds-reading-Arisaema-Calycanthus.jpg?fit=550%2C279&ssl=1 279 550 BotanyCa https://botanicallyinclined.org/wp-content/uploads/2013/04/logo-red-new2.jpg BotanyCa2024-04-05 13:49:052024-04-05 13:49:05Reading seed coats
You might also like
Ups and downs
Symplocarpus and the shipping rates
The Magic of Germination
Purple beasties – Caulophyllum
Friday’s seedlings – skunk cabbage
After-ripening
Friday’s seeds – soak, cut & nick
Search Search

Subscribe to Blog via Email

BotanyCa SEED List

Latest posts

  • Welcome to May, 2026May 15, 2026 - 4:06 pm
  • Spring beauties #2May 2, 2026 - 1:23 pm
  • Spring beautiesApril 27, 2026 - 12:56 pm
  • In pink, blue and purpleApril 18, 2026 - 3:55 pm
  • Easter #2April 10, 2026 - 5:05 pm
  • EasterApril 4, 2026 - 2:18 pm
  • Friday’s seeds – Dalea purpureaMarch 27, 2026 - 2:27 pm

Wildflowers of North America

  • Welcome to May, 2026May 15, 2026 - 4:06 pm
  • Spring beautiesApril 27, 2026 - 12:56 pm
  • Cold stratification – part 3, the practicalsJanuary 30, 2026 - 2:45 pm
  • July colorsJanuary 23, 2026 - 4:01 pm
  • Latest for OctoberOctober 31, 2025 - 1:47 pm
  • Moist packed seeds updateOctober 21, 2025 - 3:29 pm
  • Maple-leaved ViburnumSeptember 19, 2025 - 3:14 pm
  • Fall bountySeptember 16, 2025 - 4:03 pm
  • Diphylleia cymosa plant portraitAugust 15, 2025 - 2:22 pm
  • Waiting…raspberries and blackberriesAugust 2, 2025 - 4:09 pm
  • Native woodland garden recipe – updatedJuly 30, 2025 - 4:10 pm
  • Re-opening soonJuly 25, 2025 - 2:22 pm
  • Summer Seeds 2025June 25, 2025 - 1:50 pm
  • The ‘superfluous’ PenstemonJune 20, 2025 - 2:37 pm
  • Hepatica seeds sale 2025June 8, 2025 - 1:34 pm
  • Getting ready for HepaticaJune 5, 2025 - 3:10 pm
Follow us on Facebook

Just a few places I enjoy to stop by…

Plants of the World
Scottish Rock Garden Forum
Ontario Rock Garden Society
Acta Plantarum
iNaturalist
John Jearrard
macgardens.org
Prairiebreak
Plants and Rocks
Composer in the Garden

What’s in the Seeds Shop:

  • Annual and Biennial Plants
  • Aquilegia
  • Carnivorous Plants
  • Clematis
  • Corydalis & all
  • Fast Shipping
  • Gentiana & other gents...
  • Gift cards
  • Grasses & related species
  • Hepatica
  • Iris
  • Lilium and Fritillaria
  • Medicinal & Edibles
  • Moist-packed Seeds
  • Monocots
  • Orchids & other mycorrhizals
  • Paeonia
  • Primula and allies
  • Rock Garden Plants
  • Vines, Shrubs & Trees
  • Viola
  • Wildflowers of North America
  • Worldwide Plants

Subscribe to Blog via Email

Enter your email address to subscribe to this blog and receive notifications of new posts by email.

Contact
Shipping & Delivery
Germination Page
Canadian Badge
All content Copyright© 2012-2026 Botanically Inclined & BotanyCa
  • SEEDS SHOP
  • Ordering Info
  • Shipping & Delivery
  • Privacy Policy
  • Contact
Link to: Ups and downs Link to: Ups and downs Ups and downs Link to: Out in the woods – spring beauties Link to: Out in the woods – spring beauties Out in the woods – spring beauties
Scroll to top Scroll to top Scroll to top

This site uses cookies. By continuing to browse the site, you are agreeing to our use of cookies. See our Privacy policy.

OK

Cookie and Privacy Settings



How we use cookies

We may request cookies to be set on your device. We use cookies to let us know when you visit our websites, how you interact with us, to enrich your user experience, and to customize your relationship with our website.

Click on the different category headings to find out more. You can also change some of your preferences. Note that blocking some types of cookies may impact your experience on our websites and the services we are able to offer.

Essential Website Cookies

These cookies are strictly necessary to provide you with services available through our website and to use some of its features.

Because these cookies are strictly necessary to deliver the website, refusing them will have impact how our site functions. You always can block or delete cookies by changing your browser settings and force blocking all cookies on this website. But this will always prompt you to accept/refuse cookies when revisiting our site.

We fully respect if you want to refuse cookies but to avoid asking you again and again kindly allow us to store a cookie for that. You are free to opt out any time or opt in for other cookies to get a better experience. If you refuse cookies we will remove all set cookies in our domain.

We provide you with a list of stored cookies on your computer in our domain so you can check what we stored. Due to security reasons we are not able to show or modify cookies from other domains. You can check these in your browser security settings.

Google Analytics Cookies

These cookies collect information that is used either in aggregate form to help us understand how our website is being used or how effective our marketing campaigns are, or to help us customize our website and application for you in order to enhance your experience.

If you do not want that we track your visit to our site you can disable tracking in your browser here:

Other external services

We also use different external services like Google Webfonts, Google Maps, and external Video providers. Since these providers may collect personal data like your IP address we allow you to block them here. Please be aware that this might heavily reduce the functionality and appearance of our site. Changes will take effect once you reload the page.

Google Webfont Settings:

Google Map Settings:

Google reCaptcha Settings:

Vimeo and Youtube video embeds:

Other cookies

The following cookies are also needed - You can choose if you want to allow them:

Accept settingsHide notification only